UMR CNRS 5023

Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés


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logo LEHNA

UMR CNRS 5023

Laboratoire d'Ecologie des Hydrosystèmes
Naturels et Anthropisés

Ecologie, Evolution, Ecosystèmes Souterrains

E3S – Resp. Florian Malard

  • L’équipe Ecologie, Evolution, Ecosystèmes Souterrains (E3S) étudie la diversité biologique en milieu souterrain en favorisant la convergence de champs thématiques relevant de l’écologie et de l’évolution afin de comprendre, dans un contexte de changement global, les ajustements de la biodiversité et leurs conséquences sur les services écosystémiques. Cette combinaison d’études écologiques et évolutives est une étape clé pour la compréhension du fonctionnement des écosystèmes souterrains.

    Nous concentrons nos recherches sur les organismes souterrains (principalement les annélides et les Crustacés Isopodes et Amphipodes), leur évolution (depuis le génome jusqu’aux caractéristiques morphologiques et physiologiques), leur biologie (traits écologiques des organismes, écophysiologie), la composition de leurs communautés (structure des assemblages, dynamique spatiale et temporelle) ainsi que leurs rôles dans le fonctionnement des écosystèmes souterrains (processus biogéochimiques liés aux cycles de la matière organique). Nous travaillons sur les nappes phréatiques et leurs interfaces avec les cours d’eau (zone hyporhéique) et sur les systèmes karstiques, en utilisant à la fois des expérimentations sur le terrain et au laboratoire (colonnes reconstituant les échanges eau-sédiment par exemple).


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  • Liu, Y., Dedieu, K., Sánchez-Pérez, J.M., Montuelle, B., Buffan-Dubau, E., Julien, F., Azémar, F., Sauvage, S., Marmonier, P., Yao, J., Vervier, P., Gerino, M. Role of biodiversity in the biogeochemical processes at the water-sediment interface of macroporous river bed: An experimental approach. Ecological Engineering.


    Paz-Vinas, I., Loot, G., Hermoso, V., Veyssière, C., Poulet, N., Grenouillet, G., Blanchet, S. The systematic conservation planning for intraspecific genetic diversity. BiorXiv (preprint).
    Vander Vorste, R., Mermillod-Blondin, F., Hervant, F., Mons, R., Forcellini, M., Datry, T. Increased depth to the water table during river drying decreases the resilience of Gammarus pulex and alters ecosystem function. Ecohydrology.
    Bardon, C., Poly, F., Haichar, Z., Le Roux, X., Simon, L., Meiffren, G., Comte, G., Rouifed, S., Piola, F., 2017 - Biological denitrification inhibition (BDI) with procyanidins induces modification of root traits, growth and N status in Fallopia x bohemica. Soil Biology & Biochemistry 107 : 41-49
    Lécuyer, Christophe, Royer, Aurélien, Fourel, François, Seris, Magali, Simon, Laurent, Robert, François, 2017 - D/H fractionation during the sublimation of water ice. Icarus, 285 : 1–7.
    Foucreau, N., Jehan, C., Lawniczak, M., Hervant, F., 2016 - Fluctuating versus constant temperatures: effects on metabolic rate and oxidative damages in freshwater crustacean embryos. Canadian Journal of Zoology, 94 : 591–598.
    Foucreau, N., Piscart, C., Puijalon, S., Hervant, F., 2016 - Effects of rising temperature on a functional process: consumption and digestion of leaf litter by a freshwater shredder. Fundamental and Applied Limnology, 187(4) : 295-306.
    Francois, C.M., Duret, L., Simon, L., Mermillod-Blondin, F., Malard, F., Konecny-Dupré, L., Planel, R., Penel, S., J. Douady, C., Lefébure, T., 2016 - No evidence that nitrogen limitation influences the elemental composition of isopod transcriptomes and proteomes. Molecular Biology and Evolution, 33(10) : 2605–2620.
    François, C.M., Mermillod-Blondin, F., Malard, F., Fourel, F., Lécuyer, C., Douady, C.J., Simon, L., 2016 - Trophic ecology of groundwater species reveals specialization in a low-productivity environment. Functional Ecology, 30 : 262–273.
    Galassi, D.M.P., Bruce, B.L., Fiasca, B., Dole-Olivier, M.J., 2016 - A new family Lepidocharontidae with description of Lepidocharon gen. n., from the Great Barrier Reef, Australia, and redefinition of the Microparasellidae (Isopoda, Asellota). Zookeys, 594 : 11-50.
    Goedert, J., Fourel, F., Amiot, R., Simon, L., Lécuyer, C., 2016 - High-precision 34S/32S measurements in vertebrate bioapatites using purge-and-trap EA-IRMS technology. Rapid Communications in Mass Spectrometry. 30 : 2002 – 2008.
    Huguet-Tapia, J.C., Lefébure, T., Badger, J.H., Guan, G., Pettis, G.S., Stanhope, M.J., Loriaa, R., 2016 - Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species. Applied and Environmental Microbiology, 82(7) : 2146-2153.
    Maazouzi, C., Coureau, C., Piscart, C., Saplairoles, M., Baran, N., Marmonier, P., 2016 - Individual and joint toxicity of the herbicide S-metolachlor and a metabolite, deethylatrazine on aquatic crustaceans: Difference between ecological groups. Chemosphere 165 : 118-125.
    Morard, R., Escarguel, G., Weiner, A.K.M., André, A., Douady, C.J., Wade, C.M., Darling, K.F., Ujiié, Y., Seears, H.A., Quillévéré, F., De Garidel-Thoron, T., De Vargas, C., Kucera, M., 2016 - Nomenclature for the Nameless: A Proposal for an Integrative Molecular Taxonomy of Cryptic Diversity Exemplified by Planktonic Foraminifera. Systematic Biology, 65(5) : 925–940.
    Pigneret, M., Mermillod-Blondin, F., Volatier, L., Romestaing, C., Maire, E., Adrien, J., Guillard, L., Roussel, D., Hervant, F., 2016 - Urban pollution of sediments: Impact on the physiology and burrowing activity of tubificid worms and consequences on biogeochemical processes. Science of the Total Environment, 568 : 196–207.
    Stubbington, M.J., Dole-Olivier, M.J., Galassi, D.M.P., Hogan, J.P., Wood, P.J., 2016 - Characterization of Macroinvertebrate Communities in the Hyporheic Zone of River Ecosystems Reflects the Pump-Sampling Technique Used. PlosOne, 11(10), 0164372 : 1-27.
    Voisin, J., Cournoyer, B.,, Mermillod-Blondin, F., 2016 - Assessment of artificial substrates for evaluating groundwater microbial quality. Ecological Indicators, 71 : 577–586.
    Weiner, A.K.M., Morard, R., Weinkauf, M.F.G., Darling, K.F., André, A., Quillévéré, F., Ujiie, Y., Douady, C.J., De Vargas, C., Kucera, M., 2016 - Methodology for Single-Cell Genetic Analysis of Planktonic Foraminifera for Studies of Protist Diversity and Evolution. Frontiers in Marine Science, 3(255) : 1-15.
    Brazier, J.M., Suan, G.,Tacail, T., Simon, L., Martin, J.E., Mattioli, E., Balter, V., 2015 - Calcium isotope evidence for dramatic increase of continental weathering during the Toarcian oceanic anoxic event (Early Jurassic). Earth and Planetary Science Letters, 411 : 164–176.
    Cottin, D., Foucreau, N., Hervant, F., Piscart, C., 2015 - Differential regulation of hsp70 genes in the freshwater key species Gammarus pulex (Crustacea, Amphipoda) exposed to thermal stress: effects of latitude and ontogeny. Journal of Comparative Physiology B, 185(3) : 303-313.
    Der Sarkissian, C., Vilstrup, J.T., Schubert, M., Seguin-Orlando, A., Eme, D., Weinstock, J., Alberdi, M.T., Martin, F., Lopez, P.M., Prado, J.L., Prieto, A., Douady, C.J., Stafford, T.W., Willerslev, E., Orlando, L., 2015 - Mitochondrial genomes reveal the extinct Hippidion as an outgroup to all living equids. 11 : 1-5.
    Dole-Olivier, M.J., Galassi, D.M.P., Fiers, F., Malard, F., Martin, P., Martin, D., Marmonier, P., 2015 - Biodiversity in mountain groundwater: the Mercantour National Park (France) as a European hotspot. Zoosystema, 37, 4, 529-550
    Eme, D., Zagmajster, M., Fiser, C., Galassi, D., Marmonier, P., Stoch, F., Cornu, J.F., Oberdorff, T., Malard, F., 2015 - Multi-causality and spatial non-stationarity in the determinants of groundwater crustacean diversity in Europe. Ecography 38 : 531–540.
    Gette-Bouvarot, M., Mermillod-Blondin, F., Lemoine, D., Delolme, C., Danjean, M., Etienne, L., Volatier, L., 2015 - The potential control of benthic biofilm growth by macrophytes—A mesocosm approach. Ecological Engineering 75 : 178–186.
    Gette-Bouvarot, M., Volatier, L., Lassabatère, L., Lemoine, D., Simon, L., Delolme, C., Mermillod-Blondin, F., 2015 - Ecological engineering approaches to improve hydraulic properties of infiltration basins designed for groundwater recharge. Environmental Science & Technology, 49 : 9936−9944.
    Hidalgo, K., Mouline, K., Mamai, W., Foucreau, N., Dabiré K.R., Bouchereau, A., Simard, F., Renault, D., 2015 - Combining two-dimensional gel electrophoresis and metabolomic data in support of dry-season survival in the two main species of the malarial mosquito Anopheles gambiae. Data in Brief, 5 : 255–268.
    Karanovic, I., Sidorov, D.A., Marmonier, P., 2015 - Zoogeography of the ostracod genus Nannocandona (Podocopa) with description of two new species from Europe and East Asia. Annales de Limnologie - International Journal of Limnology, 51 : 297-313.
    Martin, P., Schmelz, R.M., Dole-Olivier, M.J., 2015 - Groundwater oligochaetes (Annelida, Clitellata) from the Mercantour National Park (France), with the descriptions of one new genus and two new stygobiont species. Zoosystema, 37, 4, 551-569.
    Mermillod-Blondin, F., Simon, L., Maazouzi, C., Foulquier, A., Delolme, C., Marmonier, P., 2015 - Dynamics of dissolved organic carbon (DOC) through stormwater basins designed for groundwater recharge in urban area: Assessment of retention efficiency. Water Research, 81 : 27-37.
    Mermillod-Blondin, F., Winiarski, T., Foulquier, A., Perrissin, A., Marmonier, P., 2015 - Links between sediment structures and ecological processes in the hyporheic zone: ground-penetrating radar as a non- invasive tool to detect subsurface biologically active zones. Ecohydrology, 8 : 626–641.
    Monternier, P.A., Fongy, A., Hervant, F., Drai, J., Collin-Chavagnac, D., Rouanet, J.L., Roussel, D. Skeletal muscle heterogeneity in fasting-induced mitochondrial oxidative phosphorylation flexibility in cold-acclimated ducklings. Journal of Experimental Biology. 218 : 2427-2434.
    Morard, R., Darling, K.F., Mahé, F., Audic, S., Ujiie, Y., Weiner, A.K.M., Andre, Seears, H.A., Wade, C.M., Quillévéré, F., Douady, C.J., Escarguel, G., de Garidel-Thoron, T., Siccha, M., Kucera, M., de Vargas, C., 2015 - PFR2 : a curated database of planktonic foraminifera 18S ribosomal DNA as a resource for studies of plankton ecology, biogeography and evolution. Molecular Ecology Resources, 15 : 1472–1485.
    Orias, F., Simon, L., Mialdea, G., Clair, A., Brosselin, V., Perrodin, Y., 2015 - Bioconcentration of 15N-tamoxifen at environmental concentration in liver, gonad and muscle of Danio rerio. Ecotoxicology and Environmental Safety 120 : 457–462.
    Orias, F., Simon, L., Perrodin, Y., 2015 - Experimental assessment of the bioconcentration of 15N-tamoxifen in Pseudokirchneriella subcapitata. Chemosphere 122 : 251-256.
    Orias, F., Simon, L., Perrodin, Y., 2015 - Respective contributions of diet and medium to the bioaccumulation of pharmaceutical compounds in the first levels of an aquatic trophic web. Environmental Science and Pollution Research, 22 : 20207–20214.
    Richards, V.P., Lefébure, T., Pavinski Bitar, P.D., Dogan, B., Simpson, K.W., Schukken, Y.H., Stanhope, M.J., 2015 - Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli. PlosOne, 10(3), e0119799 : 1-11.
    Voisin, J., Cournoyer, B.,, Mermillod-Blondin, F., 2015 - Utilisation de billes de verre comme substrats artificiels pour la caractérisation des communautés microbiennes dans les nappes phréatiques : mise au point méthodologique. La Houille Blanche, 4 : 2-57.
    Andre, A., Quillévéré, F., Morard, R., Ujiie, Y., Escarguel, G., de Vargas, C., de Garidel-Thoron, T., Douady, C.J., 2014 - SSU rDNA Divergence in Planktonic Foraminifera: Molecular Taxonomy and Biogeographic Implications. Plos One, 9(8), e104641 : 1-19.
    Cornut, J., Chauvet, E., Mermillod-Blondin, F., Assemat, F., Elger, A., 2014 - Aquatic Hyphomycete Species Are Screened by the Hyporheic Zone of Woodland Streams. Applied and Environmental Microbiology, 80(6) : 1949-1960.
    Dogan, B., Suzuki, H., Herlekar, D., Sartor, R.B., Campbell, B.J., Roberts, C.L., Stewart, K., Scherl, E.J., Araz, Y., Bitar, P.P., Lefébure, T., Chandler, B., Schukken, Y.H., Stanhope, M.J., Simpson, K.W., 2014 - Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of Propanediol and Iron and M-cell translocation. Inflamm Bowel Dis, 20(2) : 1919-1932.
    Dole-Olivier, M.J., Maazouzi, C., Cellot, B., Fiers, F., Galassi, D.M.P., Claret, C., Martin, D., Mérigoux, S., Marmonier, P., 2014 - Assessing invertebrate assemblages in the subsurface zone of stream sediments (0–15 cm deep) using a hyporheic sampler. Water Resources Research, 50 : 1-13.
    Eme, D., Malard, F., Colson–Proch, C., Jean, P., Calvignac, S., Konecny–Dupré, L., Hervant, F., Douady, C.J., 2014 - Integrating phylogeography, physiology, and habitat modelling to explore species range déterminants. Journal of Biogeography, 41 : 687-699.
    Fiasca, B., Stoch, F., Olivier, M.J., Maazouzi, C., Petitta, M., Di Cioccio, A., Galassi, D.M.P., 2014 - The dark side of springs: what drives small-scale spatial patterns of subsurface meiofaunal assemblages ? Journal of Limnology, 73(1) : 55-64.
    Foucreau, N., Cottin, D., Piscart, C., Hervant, F., 2014 - Physiological and metabolic responses to rising temperature in Gammarus pulex (Crustacea) populations living under continental or Mediterranean climates. Comparative Biochemistry and Physiology, Part A 168 : 69–75.
    Foulquier, A., Dehedin, A., Piscart, C., Montuelle, B., Marmonier, P., 2014 - Habitat heterogeneity influences the response of microbial communities to severe low-flow periods in alluvial wetlands. Freshwater Biology, 59(3) : 463-476.
    Gette-Bouvarot, M., Mermillod-Blondin, F., Angulo-Jaramillo, R., Delolme, C., Lemoine, D., Lassabatere, L., Loizeau, S., Volatier, L., 2014 - Coupling hydraulic and biological measurements highlights the key influence of algal biofilm on infiltration basin performance. Ecohydrology, 7(3) : 950-964.
    Graillot, D., Paran, F., Bornette, G., Marmonier, P., Piscart, C., Cadilhac, L., 2014 - Coupling groundwater modeling and biological indicators for identifying river/aquifer exchanges. SpringerPlus, 3(68) : 1-14.
    Griebler, C., Malard, F., Lefébure, T., 2014 - Current developments in groundwater ecology — from biodiversity to ecosystem function and services. Current Opinion in Biotechnology, 27 : 159–167.
    Mondy, N., Grossi, V., Cathalan, E., Delbecque, J.P., Mermillod-Blondin, F., Douady, C.J., 2014 - Sterols and steroids in a freshwater crustacean (Proasellus meridianus) : hormonal response to nutritional input. Invertebrate Biology, 133(1) : 99-107.
    Plancq, J., Mattioli, E., Pittet, B., Simon, L., Grossi, V., 2014 - Productivity and sea-surface temperature changes recorded during the late Eocene–early Oligocene at DSDP Site 511 (South Atlantic). Palaeogeography, Palaeoclimatology, Palaeoecology, 407 : 34-44.
    Zagmajster, M., Eme, D., Fiser, C., Galassi, D., Marmonier, P., Stoch, F., Cornu, J.F., Malard, F., 2014 - Geographic variation in range size and beta diversity of groundwater crustaceans: insights from habitats with low thermal seasonality. Global Ecology and Biogeography, 23 : 1135–1145.
    Andre, A., Weiner, A., Quillévéré, F., Aurahs, R., Morard, R., Douady, C.J., De Garidel-Thoron, T., Escarguel, G., De Vargas, C., Kucera, M., 2013 - The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer. Paleobiology, 39(1) : 21–39.
    Bell, J.A., Jerome, J.P., Plovanich-Jones, A.E., Smith, E.J., Gettings, J.R., Kim, H.Y., Landgraf, J.R., Lefébure, T., Kopper, J.J., Rathinam, V.A., St. Charles, J.L., Buffa, B.A., Brooks, A.P., Poe, S.A., Eaton, K.A., Stanhope, M.J., Mansfield, L.S., 2013 - Outcome of infection of C57BL/6 IL-10 mice with Campylobacter jejuni strains is correlated with genome content of open reading frames up- and down-regulated in vivo. Microbial Pathogenesis 54 : 1-19.
    Canedo-Argüelles, M., Kefford, B.J., Piscart, C., Prat , N., Schäfer, R.B., Schulz, C.J., 2013 - Salinisation of rivers: An urgent ecological issue. Environmental Pollution 173 : 157-167.
    Capderrey, C., Datry, T., Foulquier, A., Claret, C., Malard, F., 2013 - Invertebrate distribution across nested geomorphic features in braided-river landscapes. Freshwater Science, 32(4) : 1188-1204.
    Capderrey, C., Kaufmann, B., Jean, P., Malard, F., Konecny-Dupré, L., Lefébure T., Douady, C.J., 2013 - Microsatellite Development and First Population Size Estimates for the Groundwater Isopod Proasellus walteri. PLoS One, 8(9) e76213 : 1-10.
    Cornejo, O.E., Lefébure, T., Pavinski Bitar, P.D., Lang, P., Richards, V.P., Eilertson, K., Do, T., Beighton, D., Zeng, L., Ahn, S.J., Burne, R.A., Siepel, A., Bustamante, C.D., Stanhope, M.J., 2013 - Evolutionary and Population Genomics of the Cavity Causing Bacteria Streptococcus mutans. Molecular Biology and Evolution, 30(4) : 881–893.
    Cornu, J.F., Eme, D., Malard, F., 2013 - The distribution of groundwater habitats in Europe. Hydrogeology Journal, 21: 949–960.
    Dehedin, A., Dole-Olivier, M.J., Piscart, C., Mimoun, D., Bornette, G., Marmonier, P., 2013 - Long-term changes and drying modality affect interstitial assemblages of alluvial Wetlands. Wetlands, 33 : 537–550.
    Dehedin, A., Maazouzi, C., Puijalon, S., Marmonier, P., Piscart, C., 2013 – The combined effects of water level reduction and an increase in ammonia concentration on organic matter processing by key freshwater shredders in alluvial wetlands. Global Change Biology, 19 : 763–774.
    Dehedin, A.,, Piscart, C., Marmonier, P., 2013 - Seasonal variations of the effect of temperature on lethal and sublethal toxicities of ammonia for three common freshwater shredders, Chemosphere 90 : 1016–1022.
    Descloux, S., Datry, T., Marmonier, P., 2013 - Benthic and hyporheic invertebrate assemblages along a gradient of increasing streambed colmation by fine sediment. Aquatic Science, 33, 537-550.
    Eme, D., Malard, F., Konecny-Dupré, L., Lefébure, T., Douady, C.J., 2013 - Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods. Molecular Ecology. 22 : 5685-5699.
    Foucreau, N., Piscart, C., Puijalon, S., Hervant, F., 2013 - Effect of Climate-Related Change in Vegetation on Leaf Litter Consumption and Energy Storage by Gammarus pulex from Continental or Mediterranean Populations. PLoS One, 8(10) e77242 : 1-9.
    Foucreau, N., Puijalon, S., Hervant, F., Piscart, C., 2013 - Effect of leaf litter characteristics on leaf conditioning and on consumption by Gammarus pulex. Freshwater Biology, 58 : 1672–1681.
    Lawniczak, M., Romestaing, C., Roussel, D., Maazouzi, C., Renault, D., Hervant, F., 2013 - Preventive antioxidant responses to extreme oxygen level fluctuation in a subterranean crustacean. Comparative Biochemistry and Physiology, Part A 165 : 299–303.
    Lin, C., Den Bakker, H.C., Suzuki, H., Lefébure, T., Ponnala, L., Sun, Q., Stanhope, M.J., Wiedmann, M., Duhamel, G.E., 2013 - Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78T. Genome Announcements, 1(1), e00215-12 : 1-2.
    Maazouzi, C., Claret, C., Dole-Olivier, M.J., Marmonier, P., 2013 - Nutrient dynamics in river bed sediments: effects of hydrological disturbances using experimental flow manipulations. Journal of Soils and Sediments, 13 : 207–219.
    Marmonier, P., Maazouzi, C., Foulquier, A., Navel, S., François, C., Hervant, F., Mermillod-Blondin, F., Vienney, A., Barraud S., Togola, A., Piscart, C., 2013 - The use of crustaceans as sentinel organisms to evaluate groundwater ecological quality. Ecological Engineering, 57 : 118–132.
    Mermillod-Blondin, F., Foulquier, A., Gilbert, F., Navel, S., Montuelle, B., Bellvert, F., Comte, G., Grossi , V., Fourel, F., Lecuyer, F., Simon, L., 2013 - Benzo(a)pyrene inhibits the role of the bioturbator Tubifex tubifex in river sediment biogeochemistry. Science of the Total Environment 450-451 : 230–241.
    Mermillod-Blondin, F., Foulquier, A., Maazouzi, C., Navel, S., Negrutiu, Y., Vienney, A., Simon, L., Marmonier, P., 2013 - Ecological assessment of groundwater trophic status by using artificial substrates to monitor biofilm growth and activity. Ecological Indicators, 25 : 230–238.
    Mermillod-Blondin, F., Lefour, C., Lalouette, L., Renault, D., Malard, F., Simon, L., Douady, C.J., 2013 - Thermal tolerance breadths among groundwater crustaceans living in a thermally constant environment. The Journal of Experimental Biology, 216 : 1683-1694.
    Morvan, C., Malard, F., Paradis, E., Lefébure, T., Konecny-Dupré, L ., Douady, C.J., 2013 - Timetree of Aselloidea Reveals Species Diversification Dynamics in Groundwater. Systematic Biology, 62(4): 512–522.
    Navel, S., Piscart, C., Mermillod-Blondin, F., Marmonier, P., 2013 - New methods for the investigation of leaf litter breakdown in river sediments. Hydrobiologia, 700 : 301–312.
    Nogaro, G., Datry, T., Mermillod-Blondin, F., Foulquier, A., Montuelle, B., 2013 - Influence of hyporheic zone characteristics on the structure and activity of microbial assemblages. Freshwater Biology, 58 : 2567–2583.
    Palmer, S.R., Miller, J.H., Abranches, J., Zeng, L., Lefébure, T., Richards, V.P., Lemos, J.A., Stanhope, M.J., Burne, R.A., 2013 - Phenotypic Heterogeneity of Genomically-Diverse Isolates of Streptococcus mutans. PLoS One, 8(4), e61358 : 1-17.
    Piscart, C., Merzoug, D., Hafid, H., 2013 - A new species of Echinogammarus from algerian freshwaters, Echinogammarus haraktis n. Sp. (Peracarida, Amphipoda). Crustaceana 86(13-14) : 1623-1633.
    Quillévéré, F., Morard, R., Escarguel, G., Douady, C.J., Ujiie, Y., De Garidel-Thoron, T., De Vargas, C., 2013 - Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides : A perspective on the morphological species concept in planktonic foraminifera. Palaeogeography Palaeoclimatology Palaeoecology 391 : 2-12.
    Richards, V.P., Lefébure, T., Pavinski Bitar, P.D., Stanhope, M.J., 2013 - Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species. Infection, Genetics and Evolution, 14 : 200–213.
    Richards, V.P., Zadoks, Pavinski Bitar, P.D, Lefébure, T., Lang, P., Werner, B., Tikofsky, Moroni, P., Stanhope, M.J., 2013 - Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis. BMC Microbiology 2012, 12(293) : 1-16.
    Achurra A., Creuze Des Chatelliers, M., Rodriguez, P., 2012 - Troglodrilus jugeti n. sp. (Annelida, Clitellata, Tubificinae), a new stygobiont oligochaete species from south-western Europe. Zootaxa, 3229 : 35–46.
    Burne, R.A., Zeng, L., Ahn, S.J., Palmer, S.R., Liu, Y., Lefebure, T., Stanhope, M.J., Nascimento, M.M., 2012 – Progress Dissecting the oral microbiome in caries and health. Advances in Dental Research, 24(2) : 77-80.
    Cottin, D., Brown A., Oliphant, A., Mestre, N.C., Ravaux, J., Shillito , B., Thatje, S., 2012 – Sustained hydrostatic pressure tolerance of the shallow water shrimp Palaemonetes varians at different temperatures: Insights into the colonisation of the deep sea. Comparative Biochemistry and Physiology, Part A, 162 : 357–363.
    Cottin, D., Roussel, D., Foucreau, N., Hervant, F., Piscart, C., 2012 - Disentangling the effects of local and regional factors on the thermal tolerance of freshwater crustaceans. Naturwissenschaften, 99(4) : 259-264.
    Foucreau N., Renault D., Hidalgo K., Lugan R., Pétillon J., 2012. Effects of diet and salinity on the survival, egg laying and metabolic fingerprints of the ground-dwelling spider Arctosa fulvolineata(Araneae, Lycosidae). Comparative Biochemistry and Physiology Part A, 163: 388-395.
    Kefford, B.J., Hickey, G.L., Gasith, A., Ben-David, E., Dunlop, J.E., Palmer, C.G., Allan, K., Choy, S.C., Piscart, C., 2012 - Global Scale Variation in the Salinity Sensitivity of Riverine Macroinvertebrates: Eastern Australia, France, Israel and South Africa. PLoS One, 7(5) : 1-12.
    Lefébure, T., Richards, V.P., Lang, P., Pavinski-Bitar, P., Stanhope, M.J., 2012 - Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae. PLoS One, 7(5) : 1-11.
    Lemoine, D.G., Mermillod-Blondin, F., Barrat-Segretain, M.H., Massé, C., Malet, E., 2012 - The ability of aquatic macrophytes to increase root porosity and radial oxygen loss determines their resistance to sediment anoxia. Aquatic Ecology, 46(2) : 191-200.
    Maazouzi, C., Morhain, E., Masson, G., Pihan, J.C., 2012 - Fatty Acids as Indicators of Environmental Condition in Microalgae. Environmental Indicators, 7 : 3-10.
    Marmonier, P., Archambaud, G., Belaidi, N., Bougon, N., Breil, P., Chauvet, E., Claret, C., Cornut, J., Datry, T., Dole-Olivier, M.J., Dumont, B., Flipo, N., Foulquier, A., Gerino, M., Guilpart, A., Julien, F., Maazouzi, C., Martin, D., Mermillod-Blondin, F., Montuelle, B., Namour, P., Navel, S., Ombredane, D., Pelte, T., Piscart, C., Pusch, M., Stroffek, S., Robertson, A., Sanchez-Pérez, J.M., Sauvage, S., Taleb, A., Wantzen, M., Vervier, P., 2012 - The role of organisms in hyporheic processes: gaps in current knowledge, needs for future research and applications. Annales de Limnologie, International Journal of Limnology, 48 : 253-266.
    Martinez-Ansemil, E., , Creuzé des Châtelliers, M., Martin, P., Sambugar, B., 2012 - The Parvidrilidae – a diversified groundwater family : description of six new species from southern Europe, and clues for its phylogenetic position within Clitellata (Annelida). Zoological Journal of the Linnean Society, 166 : 530–558. With 10 figures.
    Navel, S., Mermillod-Blondin, F., Montuelle, B., Chauvet, E., Marmonier, P., 2012 - Sedimentary context controls the influence of ecosystem engineering by bioturbators on microbial processes in river sediments. Oikos, 121 : 1134–1144.
    Navel, S., Sauvage, S., Delmotte, S., Gerino, M., Marmonier P., Mermillod-Blondin, F., 2012 - A modelling approach to quantify the influence of fine sediment deposition on biogeochemical processes occurring in the hyporheic zone. Annales de Limnologie, International Journal of Limnology, 48 : 279-287.
    Plancq, J., Grossi, V., Henderiks, J. Simon, L., Mattioli, E., 2012 - Alkenone producers during late Oligocene–early Miocene revisited. Paleoceanography, 27 : 1-12.
    Renault, D., Bijou, A., Hervant, F. - Impact of different acclimation temperatures and duration on the chill coma temperature and oxygen consumption in the tenebrionid beetle Alphitobius diaperinus. Physiological Entomology, 37 : 354–359.
    Suzuki, S., Lefébure, T., Pavinski Bitar, P., Stanhope, M.J., 2012 - Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. BMC Genomics, 13(38) : 1-8.
    Tuekam Kayo, R., Marmonier, P., Zebaze Togouet, S.H., Nola, M., Piscart, C., 2012 – An annotated checklist of freshwater stygobiotic crustaceans of Africa and Madagascar. Crustaceana 85 (12-13) 1613-1631.
    2016 - Licci, S., Delolme, C., Marmonier, P., Philippe, M., Cornacchia, L., Gardette, V., Bouma, T., Puijalon, S. Effect of aquatic plant patches on flow and sediment: the case of Callitriche platycarpa and Elodea nuttallii. P.M. Rowinski and A. Marion (eds.), Hydrodynamic and Mass Transport at Freshwater Aquatic Interfaces, GeoPlanet: Earth and Planetary Sciences.
Site de la Doua
Université Claude Bernard - Lyon I
CNRS, UMR 5023 - LEHNA (Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés)
3-6, rue Raphaël Dubois - Bâtiments Darwin C & Forel, 69622 Villeurbanne Cedex
43, Boulevard du 11 novembre 1918
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Tél. : (33) 4 72 43 29 53 - Fax : (33) 4 72 43 11 41
Site de Vaulx-en-Velin
ENTPE
CNRS, UMR 5023 - LEHNA (Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés)
3, rue Maurice Audin
69518 Vaulx-en-Velin
Plan d'accès
Tél : (33) 04 72 04 70 56 - Fax : (33) 04 72 04 77 43