Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés

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logo LEHNA


Laboratoire d'Ecologie des Hydrosystèmes
Naturels et Anthropisés

MCU Hors-classe

Enseignant chercheur : E3S

Université Lyon 1
Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés
3, rue Raphaël Dubois - Bât. Darwin C
F-69622 Villeurbanne Cedex France

(+33) 04 72 44 79 54 (+33) 04 72 43 11 41

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  • - Prépa capes et agrégation SVT en évolution
    - Biologie animale
    - Développement durable
    - Evolution et phylogénèse

  • Sous Presse Allio, R., Teullet, S., Lutgen, D., Magdeleine, A., Koual, R., [...], Lefébure, T., Frédéric Delsuc. Comparative transcriptomics reveals divergent paths of chitinase evolution underlying dietary convergence in ant-eating mammals. (10.1101/2022.11.29.518312)

    Sous Presse Laugier, F., Saclier, N., [...], Axelle Braun, Lara Konecny, Lefébure, T., Luquet, E., Plénet, S., [...], David, P. Both nuclear and cytoplasmic polymorphisms are involved in genetic conflicts over male fertility in the gynodioecious snail, Physa acuta. Evolution - International Journal of Organic Evolution, ⟨10.1093/evolut/qpae053⟩

    Sous Presse Saclier, N., Duchemin, L., Konecny-Dupré, L., [...], Lefébure, T., François, C., Issartel, C., [...], Douady, C.J., Malard, F.0, 2024 - A collaborative backbone resource for comparative studies of subterranean evolution: The World Asellidae database. Molecular Ecology Resources,⟨10.1111/1755-0998.13882⟩

    2022 David, P., Degletagne, C., Saclier, N., Jennan, A., Jarne, P., Plénet S., Konecny, L., François C., Guégen, L., Garcia, N., Lefébure, T., Luquet, E. Extreme mitochondrial DNA divergence underlies genetic conflict over sex determination. Current Biology, 32 : 2325-2333. ⟨10.1016/j.cub.2022.04.014⟩

    2022 Malard, F., Verdier, H., Konecny-Dupré, L., Eme, D., Douady, C.J., Lefébure T., 2022 - Subterranean species inventory in the molecular era. Karstologia, 79:73-78.

    2022 Touzot, M., Lefebure, T., Lengagne, T., Secondi, J., Dumet, A., Konecny-Dupré, L., Veber, P., Navratil, V., Duchamp, C., Mondy N., 2022 - Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads. Science of the Total Environment, 818, pp.151734. ⟨10.1016/j.scitotenv.2021.151734⟩

    2022 Verdier, E., Konecny‐dupré, L., Marquette, C., Reveron, H., Tadier, S., Grémillard, L., Barthès, A., Datry, T., Bouchez, A., Lefébure, T., 2022 - Passive sampling of environmental DNA in aquatic environments using 3D‐printed hydroxyapatite samplers. Molecular Ecology Resources. 22:2158-2170. ⟨10.1111/1755-0998.13604⟩

    2021 Blackman, R., Altermatt, F., Foulquier, A., Lefébure, T., Gauthier, M., Bouchez, A., Stubbington, R., Weigand, A.M., Leese, F., Datry, T., 2021 - Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools. Frontiers in Ecology and the Environment, Ecological Society of America, 19 (10), 574-583. ⟨10.1002/fee.2404⟩

    2020 Francois, C.M., Simon, L., Malard, F., Lefébure, T., Douady, C. J., Mermillod‐Blondin, F., 2020 - Trophic selectivity in aquatic isopods increases with the availability of resources. Functional Ecology, 34:1078–1090.

    2020 Gauthier, M., Konecny-Dupré, L., Nguyen, A., Elbrecht, V., Datry, T., Douady, C.J., Lefébure, T.. 2020 - Enhancing DNA metabarcoding performance and applicability with bait capture enrichment and DNA from conservative ethanol. Molecular Ecology Resources, 20 : 79-86.

    2020 Malard, F., Grison, P., Duchemin, L., Konecny‐Dupré, L., Lefébure, T., Saclier, N., Eme, D., Martin, C., Callou, C., Douady, C.J. GOTIT: A laboratory application software for optimizing multi‐criteria species‐based research. Methods Ecol Evol., 11:159-167.

    2020 Saclier, N., Chardon, P., Malard, F., Konecny-Dupré, L., Eme, D., Bellec, A., Breton, V., Duret, L., Lefébure, T., Douady, C.J., 2020 - Bedrock radioactivity influences the rate and spectrum of mutation. eLife, 9:e56830.

    2018 Saclier, N., Francois, C.M., Konecny-Dupré, L., Lartillot, N., Guéguen, L., Duret, L., Malard, F., Douady, C.J., Lefébure, T., 2018 - Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods. Molecular Biology and Evolution, 25(12) : 2900-2912.

    2017 Lefébure, T., Morvan, C., Malard, F., François, C., Konecny-Dupré, L., Guéguen, L., Weiss-Gayet, M., Seguin-Orlando, A., Ermini L., Der Sarkissian, C., Charrier, N.P., Eme, D., Mermillod-Blondin, F., Duret, L., Vieira, C., Orlando, L., Douady, C., 2017 - Less effective selection leads to larger genomes. Genome Research, 27 : 1016-1028.

    2016 Francois, C.M., Duret, L., Simon, L., Mermillod-Blondin, F., Malard, F., Konecny-Dupré, L., Planel, R., Penel, S., J. Douady, C., Lefébure, T., 2016 - No evidence that nitrogen limitation influences the elemental composition of isopod transcriptomes and proteomes. Molecular Biology and Evolution, 33(10) : 2605–2620.

    2016 Huguet-Tapia, J.C., Lefébure, T., Badger, J.H., Guan, G., Pettis, G.S., Stanhope, M.J., Loriaa, R., 2016 - Genome Content and Phylogenomics Reveal both Ancestral and Lateral Evolutionary Pathways in Plant-Pathogenic Streptomyces Species. Applied and Environmental Microbiology, 82(7) : 2146-2153.

    2015 Richards, V.P., Lefébure, T., Pavinski Bitar, P.D., Dogan, B., Simpson, K.W., Schukken, Y.H., Stanhope, M.J., 2015 - Genome based phylogeny and comparative genomic analysis of intra-mammary pathogenic Escherichia coli. PlosOne, 10(3), e0119799 : 1-11.

    2014 Dogan, B., Suzuki, H., Herlekar, D., Sartor, R.B., Campbell, B.J., Roberts, C.L., Stewart, K., Scherl, E.J., Araz, Y., Bitar, P.P., Lefébure, T., Chandler, B., Schukken, Y.H., Stanhope, M.J., Simpson, K.W., 2014 - Inflammation-associated adherent-invasive Escherichia coli are enriched in pathways for use of Propanediol and Iron and M-cell translocation. Inflamm Bowel Dis, 20(2) : 1919-1932.

    2014 Griebler, C., Malard, F., Lefébure, T., 2014 - Current developments in groundwater ecology — from biodiversity to ecosystem function and services. Current Opinion in Biotechnology, 27 : 159–167.

    2013 Bell, J.A., Jerome, J.P., Plovanich-Jones, A.E., Smith, E.J., Gettings, J.R., Kim, H.Y., Landgraf, J.R., Lefébure, T., Kopper, J.J., Rathinam, V.A., St. Charles, J.L., Buffa, B.A., Brooks, A.P., Poe, S.A., Eaton, K.A., Stanhope, M.J., Mansfield, L.S., 2013 - Outcome of infection of C57BL/6 IL-10 mice with Campylobacter jejuni strains is correlated with genome content of open reading frames up- and down-regulated in vivo. Microbial Pathogenesis 54 : 1-19.

    2013 Capderrey, C., Kaufmann, B., Jean, P., Malard, F., Konecny-Dupré, L., Lefébure T., Douady, C.J., 2013 - Microsatellite Development and First Population Size Estimates for the Groundwater Isopod Proasellus walteri. PLoS One, 8(9) e76213 : 1-10.

    2013 Cornejo, O.E., Lefébure, T., Pavinski Bitar, P.D., Lang, P., Richards, V.P., Eilertson, K., Do, T., Beighton, D., Zeng, L., Ahn, S.J., Burne, R.A., Siepel, A., Bustamante, C.D., Stanhope, M.J., 2013 - Evolutionary and Population Genomics of the Cavity Causing Bacteria Streptococcus mutans. Molecular Biology and Evolution, 30(4) : 881–893.

    2013 Eme, D., Malard, F., Konecny-Dupré, L., Lefébure, T., Douady, C.J., 2013 - Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods. Molecular Ecology. 22 : 5685-5699.

    2013 Lin, C., Den Bakker, H.C., Suzuki, H., Lefébure, T., Ponnala, L., Sun, Q., Stanhope, M.J., Wiedmann, M., Duhamel, G.E., 2013 - Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78T. Genome Announcements, 1(1), e00215-12 : 1-2.

    2013 Morvan, C., Malard, F., Paradis, E., Lefébure, T., Konecny-Dupré, L ., Douady, C.J., 2013 - Timetree of Aselloidea Reveals Species Diversification Dynamics in Groundwater. Systematic Biology, 62(4): 512–522.

    2013 Palmer, S.R., Miller, J.H., Abranches, J., Zeng, L., Lefébure, T., Richards, V.P., Lemos, J.A., Stanhope, M.J., Burne, R.A., 2013 - Phenotypic Heterogeneity of Genomically-Diverse Isolates of Streptococcus mutans. PLoS One, 8(4), e61358 : 1-17.

    2013 Richards, V.P., Lefébure, T., Pavinski Bitar, P.D., Stanhope, M.J., 2013 - Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species. Infection, Genetics and Evolution, 14 : 200–213.

    2013 Richards, V.P., Zadoks, Pavinski Bitar, P.D, Lefébure, T., Lang, P., Werner, B., Tikofsky, Moroni, P., Stanhope, M.J., 2013 - Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis. BMC Microbiology 2012, 12(293) : 1-16.

    2012 Burne, R.A., Zeng, L., Ahn, S.J., Palmer, S.R., Liu, Y., Lefebure, T., Stanhope, M.J., Nascimento, M.M., 2012 – Progress Dissecting the oral microbiome in caries and health. Advances in Dental Research, 24(2) : 77-80.

    2012 Lefébure, T., Richards, V.P., Lang, P., Pavinski-Bitar, P., Stanhope, M.J., 2012 - Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae. PLoS One, 7(5) : 1-11.

    2012 Suzuki, S., Lefébure, T., Pavinski Bitar, P., Stanhope, M.J., 2012 - Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. BMC Genomics, 13(38) : 1-8.

Site de la Doua
Université Claude Bernard - Lyon I
CNRS, UMR 5023 - LEHNA (Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés)
3-6, rue Raphaël Dubois - Bâtiments Darwin C & Forel, 69622 Villeurbanne Cedex
43, Boulevard du 11 novembre 1918
Plan d'accès
Tél. : (33) 4 72 43 29 53 - Fax : (33) 4 72 43 11 41
Site de Vaulx-en-Velin
CNRS, UMR 5023 - LEHNA (Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés)
3, rue Maurice Audin
69518 Vaulx-en-Velin
Plan d'accès
Tél : (33) 04 72 04 70 56 - Fax : (33) 04 72 04 77 43