UMR CNRS 5023

Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés


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logo LEHNA

UMR CNRS 5023

Laboratoire d'Ecologie des Hydrosystèmes
Naturels et Anthropisés

Ecologie, Evolution, Ecosystèmes Souterrains

Ecologie, Evolution, Ecosystèmes Souterrains

E3S – Resp. F. HERVANT

  • L’équipe Ecologie, Evolution, Ecosystèmes Souterrains (E3S) étudie la diversité biologique en milieu souterrain en favorisant la convergence de champs thématiques relevant de l’écologie et de l’évolution afin de comprendre, dans un contexte de changement global, les ajustements de la biodiversité et leurs conséquences sur les services écosystémiques. Cette combinaison d’études écologiques et évolutives est une étape clé pour la compréhension du fonctionnement des écosystèmes souterrains.

    Nous concentrons nos recherches sur les organismes souterrains (principalement les annélides et les Crustacés Isopodes et Amphipodes), leur évolution (depuis le génome jusqu’aux caractéristiques morphologiques et physiologiques), leur biologie (traits écologiques des organismes, écophysiologie), la composition de leurs communautés (structure des assemblages, dynamique spatiale et temporelle) ainsi que leurs rôles dans le fonctionnement des écosystèmes souterrains (processus biogéochimiques liés aux cycles de la matière organique). Nous travaillons sur les nappes phréatiques et leurs interfaces avec les cours d’eau (zone hyporhéique) et sur les systèmes karstiques, en utilisant à la fois des expérimentations sur le terrain et au laboratoire (colonnes reconstituant les échanges eau-sédiment par exemple).


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  • HAL - SDE


    Allio, R., Teullet, S., Lutgen, D., Magdeleine, A., Koual, R., [...], Lefébure, T., Frédéric Delsuc. Comparative transcriptomics reveals divergent paths of chitinase evolution underlying dietary convergence in ant-eating mammals. (10.1101/2022.11.29.518312)
    Laugier, F., Saclier, N., [...], Axelle Braun, Lara Konecny, Lefébure, T., Luquet, E., Plénet, S., [...], David, P. Both nuclear and cytoplasmic polymorphisms are involved in genetic conflicts over male fertility in the gynodioecious snail, Physa acuta. Evolution - International Journal of Organic Evolution, ⟨10.1093/evolut/qpae053⟩
    Mermillod-Blondin, F., Gautreau, E., Pinasseau, L., Gouze, E., Vallier, F., Volatier, L., Nogaro, G. Interactions between sediment characteristics and oxygen conditions at the sediment-water interface of reservoirs: influences on nutrient dynamics and eutrophication Authors. Hydrobiologia. ⟨10.1007/s10750-024-05508-3⟩
    Ros, J., Badri, F.E., Cartier, A., Marie, B., Fili, A., [...], Fourel, F., [...], Bentaleb I. Forest and agricultural dynamics in the Haouz plain over the last millennium: archaeobotanical and isotopic research at Aghmat (Morocco). In press ⟨10.1007/s10745-024-00507-3⟩
    Anderson, T.M., Hepler, S., Holdo, R., Donaldson, J., [...], Pansu, J., [...], Craig Packer, 2024 - Interplay of competition and facilitation in grazing succession by migrant Serengeti herbivores. Science, 383 (6684), pp.782-788. ⟨10.1126/science.adg0744⟩
    Barthélémy, N., Mermillod-Blondin, F., Krause, S., Simon, L., [...] Datry, T., 2024 - The Duration of Dry Events Promotes PVC Film Fragmentation in Intermittent Rivers. Environmental Science and Technology, 58 (28), pp.12621-12632. ⟨10.1021/acs.est.4c00528⟩
    Bénitière, F., Duret, L., Necsulea, A., 2024 - GTDrift: a resource for exploring the interplay between genetic drift, genomic and transcriptomic characteristics in eukaryotes. NAR Genomics and Bioinformatics, 6 (2), pp.lqae064. 10.1093/nargab/lqae064
    Dambrine, E., Gaillard, J., Chanudet, V., Vigouroux, R., Attéia, O., Van Der Heijden, G., Colas, F., 2024 - Réduction des oxydes de fer, déstockage du carbone des sols noyés, et émission de méthane par un réservoir tropical. Étude et Gestion des Sols, 2024, 31, pp.141-159.
    Douce, P., Simon, L., Colas, F., Mermillod-Blondin, F., [...] Eymar-Dauphin, P., Dubreucque, R., Bittebière, A.K., 2024 - Warming drives feedback between plant phenotypes and ecosystem functioning in sub-Antarctic ponds. Science of the Total Environment, Science of the Total Environment, pp.169504. ⟨10.1016/j.scitotenv.2023.169504⟩
    Haubrock, P., Soto, I., Kourantidou, M., Ahmed, D.A., Serhan A., Tarkan, A.S., [...], Floury, M., [...], Cuthebert, R.N., 2024 - Understanding the complex dynamics of zebra mussel invasions over several decades in European rivers: drivers, impacts and predictions. Oikos, 4 (e10283). ⟨10.1111/oik.10283⟩
    Mammola, S., Graco-Roza, C., Ballarin, F., Hesselberg, T., Isaia, M., Lunghi, E., Mouron, S., [...], Cardoso, P.,, 2024 - Functional convergence underground? The scale‐dependency of community assembly processes in European cave spiders. Global Ecology and Biogeography, 33, pp.e13840. ⟨10.1111/geb.13840⟩
    Morard, R., Darling, K., Weiner, A., Hassenrück, C., [...], Escarguel, G., Douady, C.J., [...], Kucera, M., 2024 - The global genetic diversity of planktonic foraminifera reveals the structure of cryptic speciation in plankton. Biological Reviews, 99 (4), pp.1218-1241. ⟨10.1111/brv.13065⟩
    Tiegs, S.D., Capps, K.A., Costello, D.M., Schmidt, J.P., Patrick, C.J., [...], Colas, F., [...], Mark Isken, The CELLDEX Consortium, 2024 - Human activities shape global patterns of decomposition rates in rivers. Science, 2024, 384 (6701), pp.1191 - 1195. ⟨10.1126/science.adn1262⟩
    Verdier, H., Datry, T., Logez, M., Konecny-Dupré, L., Gauthier, M., Lefébure, T., 2024 - Environmental DNA Particle Size Distribution and Quantity Differ Across Taxa and Organelles. Environmental DNA, 6 (5), pp.e598. ⟨10.1002/edn3.598⟩
    Wazne, M., Mermillod-Blondin, F., Vallier, M., Krause, S., Barthélémy, N., SIMON, L., 2024 - Optimization of glass separating funnels to facilitate microplastic extraction from sediments. MethodsX, 12, pp.102540. ⟨10.1016/j.mex.2023.102540⟩
    Alonso, L., Pommier, T., Simon, L., Maucourt, F., Doré, J., Dubost, A., Trân Van, V., Minard, G., Valiente Moro, C., Douady, C.J., Moënne-Loccoz, Y., 2023 - Microbiome analysis in Lascaux Cave in relation to black stain alterations of rock surfaces and collembola. Environmental Microbiology Reports, 15:80-91. ⟨10.1111/1758-2229.13133⟩
    Amiot,R., Golovneva, L.B., Godefroit, P., Goedert, J., Garcia, G., Lécuyer, C., Fourel, F., Herman, A.B., Spicer, R.A., 2023 - High-latitude dinosaur nesting strategies during the latest cretaceous in North-Eastern Russia. Diversity, 15 (4), pp.565. ⟨10.3390/d15040565⟩
    Beck, M., Billoir, E., Floury, M., Usseglio-Polatera, P., Danger, M., 2023 - A 34-year survey under phosphorus decline and warming: Consequences on stoichiometry and functional trait composition of freshwater macroinvertebrate communities. Science of the Total Environment, 858, Part 3, pp.159786. ⟨10.1016/j.scitotenv.2022.159786⟩
    Deldicq, M., Mermillod-Blondin, F., Bouchet, V.M.P., 2023 - Sediment reworking of intertidal sediments by the benthic foraminifera Haynesina germanica: the importance of motion behaviour and densities. Proceedings of the Royal Society B: Biological Sciences, 290: 20230193. (10.1098/rspb.2023.0193)
    Dendievel, A.M., Wazne, M., Vallier, M., Mermillod-Blondin, F., Mourier B., Piégay H., Winiarski , T., Krause S., Simon, L., 2023 - Environmental and land use controls of microplastic pollution along the gravel-bed Ain River (France) and its “Plastic Valley”. Water Research, 230, 119518. (10.1016/j.watres.2022.119518)
    Deschodt, L., Hérisson, D., Antoine, P., Locht, J.L., Gauthier, A., [...] Fourel, F., [...], Clément Virmoux, 2023 - Waziers, le Bas‑Terroir (Scarpe Plain, Northern France) : synthesis of studies on 2011‑2015 observations and evidence of a continuous sedimentary record from the end of the Saalian (MIS 6) to the Eemian Optimum (MIS 5e).. Quaternaire, 31 (1), pp.4563. ⟨10.4000/quaternaire.17705⟩
    Douce, P., Mermillod‐blondin, F., Simon, L., Dolédec, S., Eymar‐dauphin, P., Renault, D., Sulmon, C., Vallier, F., Bittebière, A.K., 2023 - Biotic and abiotic drivers of aquatic plant communities in shallow pools and wallows on the sub‐Antarctic Iles Kerguelen. Polar Biology, 46, pp.303-318. ⟨10.1007/s00300-023-03122-y⟩
    Douce, P., Renault, D., Simon, L., Mermillod-Blondin, F., Vallier, F., Bittebière A.K., 2023 - How does trait variance partitioning help us to understand plant community assembly? The example of pond communities in the Kerguelen Islands. Journal of Vegetation Science, Journal of Vegetation Science, 34 (6), pp.e13217. ⟨10.1111/jvs.13217⟩
    Douce, P., Saiz, H., Benot, M.L., Mermillod-Blondin, F., Oury, Y., Simon, L., Renault, D., Vallier, F., Fontaine, M., Bittebiere, A.K., 2023 - Functional characteristics rather than co-occurrences determine the outcome of interactions between neighbouring plants in sub-Antarctic ponds: Consequences for macrophyte community biomass. Freshwater Biology, 68:561–576. (10.1111/fwb.14047)
    Gautreau, E., Volatier, L., Nogaro, G., Gouze, E., Marmonier, P., Mermillod-Blondin, F., 2023 - Interactions between microbial activity and bioturbation modes of benthic invertebrates determine nutrient releases from reservoir sediments. Freshwater Biology, 68:245-259 ⟨10.1111/fwb.14021⟩
    Haase, P., Bowler, D.E., Baker, N.J., Bonada, N., Domisch, S., [...] Floury, M., [...] Welti E.A.R., 2023 - The recovery of European freshwater biodiversity has come to a halt. Nature, 620 (7974), pp.582-588. ⟨10.1038/s41586-023-06400-1⟩
    Langlet, D., Mermillod-Blondin, F., Deldicq, N., Bauville, A., Duong, G., [...] Konecny, L., [...] Bouchet, V.M.P., 2023 - Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment. Biogeosciences, 20 (23), pp.4875-4891. ⟨10.5194/bg-20-4875-2023⟩
    Lebon, Y., François, C., Navel, S., Vallier, F., Guillard, L., Pinasseau L., Oxarango, L., Volatier, L., Mermillod-Blondin, F., 2023 - Aquifer recharge by stormwater infiltration basins: Hydrological and vadose zone characteristics control the impacts of basins on groundwater chemistry and microbiology. Science of the Total Environment, 865, pp.161115. ⟨10.1016/j.scitotenv.2022.161115⟩
    Luccisano, V., Cuny, G., Pradel, A., Fourel, F., [...], Amiot, R., 2023 - Palaeoenvironmental and palaeoecological reconstructions based on oxygen, carbon and sulfur isotopes of Early Permian shark spines from the French Massif central. Palaeogeography, Palaeoclimatology, Palaeoecology, 2023, 628, pp.111760. ⟨10.1016/j.palaeo.2023.111760⟩
    Marle, P., Simon, L., Rigal, A., Guicharnaud, C., Gauthier, P., Garcia, N., Castella, E., Mayor H., Slaveykova, V.I., Olivier, J.M, 2023 - Flow and plankton availability control young-of-the-year fish diet in two floodplain nurseries. Ecology of Freshwater Fish, 323:824-841. (10.1111/eff.12724)
    Martin, J.E., Tacail, T., Simon, L., Hassler, A., Télouk, P., Balter, V., 2023 - Inferring odontocete life history traits in dentine using a multiproxy approach (δ 15 N, δ 44/42 Ca and trace elements). Rapid Communications in Mass Spectrometry, 37 (19), pp.e9612. ⟨10.1002/rcm.9612)
    Nobre, R., Boulêtreau, S., Colas, F., Azemar, F., Tudesque, L., Parthuisot, N., Favriou, P., Cucherousset, J., 2023 - Potential ecological impacts of floating photovoltaics on lake biodiversity and ecosystem functioning. Renewable and Sustainable Energy Reviews, 2023, 188, pp.113852. ⟨10.1016/j.rser.2023.113852⟩
    Pinasseau, L., Mermillod-Blondin, F., Fildier, A., Fourel, F., Vallier, F., Guillard, L., Wiest, L., Volatier, L., 2023 - Determination of groundwater origins and vulnerability based on multi-tracer investigations: New contributions from passive sampling and suspect screening approach. Science of the Total Environment, 876, pp.162750. ⟨10.1016/j.scitotenv.2023.162750⟩
    Pochat-Cottilloux, Y., Martin, J.E., Faure-Brac, M.G., Jouve, S., de Muizon, C., Cubo, J., Lécuyer, C., Fourel, F., Amiot, R., 2023 - A multi-isotopic study reveals the palaeoecology of a sebecid from the Paleocene of Bolivia. Palaeogeography, Palaeoclimatology, Palaeoecology, 625, pp.111667. ⟨10.1016/j.palaeo.2023.111667⟩
    Rey, K., Amiot, R., Fourel, F., Luyt, J., Fluteau, F., Lécuyer, C., 2023 - Paleoenvironmental implications of Permo-Triassic geographic shift in oxygen stable isotope (δ18Op) from tetrapod bone in the South African Karoo Basin. Journal of African Earth Sciences, 205, ⟨10.1016/j.jafrearsci.2023.104999⟩
    Soto, I., Cuthbert, R.N., Ahmed, D.A., Kouba, A., Domisch, S., [...] Floury, M., [...], Haubrock, P.J., 2023 - Tracking a killer shrimp: Dikerogammarus villosus invasion dynamics across Europe. Diversity and Distributions, 29(1), pp.157-172. ⟨10.1111/ddi.13649⟩
    Tabaja, N., Amouroux, D., Chalak, L., Fourel, F., Tessier, E., Jomaa, I., El Riachy, M., Bentaleb, I., 2023 - Seasonal variation of mercury concentration of ancient olive groves of Lebanon. Biogeosciences, 20:619 - 633. ⟨10.5194/bg-20-619-2023⟩
    Tixier, G., Rochfort, Q., Grapentine, L., Marsalek, J., Lafont, M., Vivien, R., 2023 -Toxicity of sediments in eight urban stormwater management ponds: bioassessment by oligochaete community metrics used in the sediment quality triad. Water Science and Technology, 87 (5), pp.1112-1128. ⟨10.2166/wst.2023.051⟩
    Wazne, M., Mermillod-Blondin, F., Vallier, M., Hervant, F., Dumet, A., Nel, H.A., Kukkola, A., Krause, S., Simon, L., 2023 - Microplastics in Freshwater Sediments Impact the Role of a Main Bioturbator in Ecosystem Functioning. Environmental Science & Technology, 57, 3042−3052. (10.1021/acs.est.2c05662)
    Banerjee, P., Stewart, K.E., Antognazza, C.M.,Bunholi, I.V., [...], Verdier, H., [...], Chen, C.Y., 2022 - Plant–animal interactions in the era of environmental DNA ( eDNA )—A review. Environmental DNA, 4 (5), pp.987-999. ⟨10.1002/edn3.308⟩
    Clauzel, T., Richardin, P., Ricard, J., Le Bechennec, Y., Amiot, R., Fourel, F., [...] Lécuyer, C., 2022 - Hydrogen isotope measurements of bone and dental tissues from archaeological human and animal samples and their use as climatic and diet proxies. Journal of Archaeological Science, 147, 105676. ⟨10.1016/j.jas.2022.105676⟩
    Conart, C., Saclier, N., Foucher, F., Goubert, C., Rius-Bony, A., Paramita, S.N., Moja, S., Thouroude, T., Douady, C.D., Sun, P., Nairaud, B., Saint-Marcoux, D., Bahut, M., Jeauffre, J., Hibrand Saint-Oyant, L., Schuurink, R.C., Magnard, J.L., Boachon, B., Dudareva, N., Baudino, S., Caissard, J.C., 2022 - Duplication and specialization of NUDX1 in Rosaceae led to geraniol production in rose petals. Molecular Biology and Evolution, Oxford University Press (OUP), 39(2) : 651522. ⟨11.1193/molbev/msac112⟩
    Cordonnier, M., Kaufmann, B., Simon, L., Escarguel, G., Mondy, N., 2022 - Discrimination of conspecifics from heterospecifics in a hybrid zone: Behavioral and chemical cues in ants. Insect Science, 29 (1), pp.276-288. ⟨10.1111/1744-7917.12915⟩
    Cossin-Sevrin, N., Hsu, B.Y., Marciau, C., Viblanc, V.A., Ruuskanen, S., Stier, A., 2022 - Effect of prenatal glucocorticoids and thyroid hormones on developmental plasticity of mitochondrial aerobic metabolism, growth and survival: an experimental test in wild great tits Journal of Experimental Biology, 225, jeb243414. ⟨10.1242/jeb.243414⟩
    Costello, D., Tiegs, S., Boyero, L., Canhoto, C., Capps, K, [...], Colas, F., [...], Jacob A.Z., 2022 - Global Patterns and Controls of Nutrient Immobilization on Decomposing Cellulose in Riverine Ecosystems. Global Biogeochemical Cycles, 36 (3), e2021GB007163. ⟨10.1029/2021GB007163⟩
    David, P., Degletagne, C., Saclier, N., Jennan, A., Jarne, P., Plénet S., Konecny, L., François C., Guégen, L., Garcia, N., Lefébure, T., Luquet, E. Extreme mitochondrial DNA divergence underlies genetic conflict over sex determination. Current Biology, 32 : 2325-2333. ⟨10.1016/j.cub.2022.04.014⟩
    Dole-Olivier, M.J., Creuzé Des Châtelliers, M., Galassi, D.M.P., Lafont, M., Mermillod-Blondin, F., Paran, F., Graillot, D., Gaur, S., Marmonier, P., 2022 - Drivers of Functional Diversity in the Hyporheic Zone of a Large River. Science of the Total Environment, 843, pp.156985.
    Guégan, M., Martin, M., Tran Van, V., Fel, B., Hay, A.E., Simon L. [...], Moro, C.V., 2022 - Mosquito sex and mycobiota contribute to fructose metabolism in the Asian tiger mosquito Aedes albopictus. Microbiome, 2022, 10 (1), pp.138. ⟨10.1186/s40168-022-01325-9⟩
    Jaron K.S., Parker D. J., Anselmetti Y., Van P. T., Bast J., Dumas Z., Figuet E., Francois C.M., Hayward K., Rossier V., Simion P., Robinson-Rechavi M., Galtier N., Schwander T., 2022 - Convergent consequences of parthenogenesis on stick insect genomes. Science Advances , American Association for the Advancement of Science (AAAS), 8 (8), ⟨10.1126/sciadv.abg3842⟩
    Licci, S., Marmonier, P., Wharton, G., Delolme, C., Mermillod-Blondin, F., Simon, L., Vallier, F., Bouma, T.J., Puijalon, S., 2022 - Scale-dependent effects of vegetation on flow velocity and biogeochemical conditions in aquatic systems. Science of the Total Environment, 833, pp.155123. ⟨10.1016/j.scitotenv.2022.155123⟩
    Malard, F., Verdier, H., Konecny-Dupré, L., Eme, D., Douady, C.J., Lefébure T., 2022 - Subterranean species inventory in the molecular era. Karstologia, 79:73-78.
    Malek-Hosseini, M.J., Jugovic, J., Fatemi, Y., Kuntner, M., Kostanjšek, R., [...], Douady, C.J., Malard, F., 2022 - A new obligate groundwater species of Asellus (Isopoda, Asellidae) from Iran. Subterranean Biology, 2022, 42, pp.97-124. ⟨10.3897/subtbiol.42.79447⟩. ⟨hal-03623375⟩
    Morard, R., Hassenrück, C., Greco, M., Fernandez-Guerra, A., Rigaud, S., Douady, C.J., Kucera, M., 2022 - Renewal of planktonic foraminifera diversity after the Cretaceous Paleogene mass extinction by benthic colonizers. Nature Communications, 13 (1), pp.7135. ⟨10.1038/s41467-022-34794-5⟩
    Mouron, S., Eme, D., Bellec, A., Bertrand, M., Mammola, S., Liébault, F., Douady, C.J., Malard, F., 2022 - Unique and shared effects of local and catchment predictors over distribution of hyporheic organisms: does the valley rule the stream?. Ecography, e06099, ⟨10.1111/ecog.06099⟩
    Mouton, T., Leprieur, F., Floury, M., Stephenson, F., Verburg, P., Tonkin, J.D., 2022 - Climate and land‐use driven reorganisation of structure and function in river macroinvertebrate communities. Ecography, 3, e06148, ⟨10.1111/ecog.06148⟩
    Ndiaye, A., Bentaleb, I., Favier, C., Fourel, F., Sebag, D., [...], Diouf, B., 2022 - Reconstruction of the Holocene Climate and Environmental changes of Niayes Peat Bog in Northern coast of Senegal (NW Africa) based on Stable Isotopes and Charcoals Analysis. Quaternary Science Reviews, 2022, 289, pp.107609. ⟨10.1016/j.quascirev.2022.107609⟩
    Picard, C., Floury, M., Seyedhashemi, H., Morel, M., Pella, H., [...], Maire, A., 2022 - Direct habitat descriptors improve the understanding of the organization of fish and macroinvertebrate communities across a large catchment. PLoS ONE, 2022, 17 (9), pp.e0274167. ⟨10.1371/journal.pone.0274167⟩
    Salmon, Q., Colas, F., Westrelin, S., Dublon, J., Baudoin, J.M., 2022 - Floating Littoral Zone (FLOLIZ): A solution to sustain macroinvertebrate communities in regulated lakes?. Ecological Engineering, Elsevier, 2022, 176, pp.106509. ⟨10.1016/j.ecoleng.2021.106509⟩
    Séon, N., Amiot, R., Suan, G., Lécuyer, C., Fourel, F., Demaret, F., Vinçon-Laugier, A., Charbonnier, S., Vincent, P., 2022 - Intra-skeletal variability in phosphate oxygen isotope composition reveals regional heterothermies in marine vertebrates. Biogeosciences, 2022, 19 (10), pp.2671-2681. ⟨10.5194/bg-19-2671-2022⟩
    Stefano Mammola, Martina Pavlek, Bernhard A Huber, Marco Isaia, Francesco Ballarin, [...], Mouron S. [...], Cardoso, P., 2022 - A trait database and updated checklist for European subterranean spiders. Scientific Data , 9 (1), pp.236. ⟨10.1038/s41597-022-01316-3⟩
    Thorel, M., Marmonier, P., Bertrand, C., Claret, C., Fayolle, S., Logez, M., Olivier, J.M., Oursel, B., Vienney, A., Piegay, H., Franquet, E., 2022 - Does hydrological connectivity control functional characteristics of artificial wetland communities ? Evidence from the Rhône River. Aquatic Sciences - Research Across Boundaries, 84 (4), pp.66. ⟨10.1007/s00027-022-00889-w⟩
    Tison-Rosebery, J., Leboucher, T., Archaimbault, V., Belliard, J., Carayon, D., Férréol, M., Floury, M., [...], Passy, S.L., 2022 - Decadal biodiversity trends in rivers reveal recent community rearrangements. Science of the Total Environment, 823, pp.153431. ⟨10.1016/j.scitotenv.2022.153431⟩
    Touzot, M., Lefebure, T., Lengagne, T., Secondi, J., Dumet, A., Konecny-Dupré, L., Veber, P., Navratil, V., Duchamp, C., Mondy N., 2022 - Transcriptome-wide deregulation of gene expression by artificial light at night in tadpoles of common toads. Science of the Total Environment, 818, pp.151734. ⟨10.1016/j.scitotenv.2021.151734⟩
    Verdier, E., Konecny‐dupré, L., Marquette, C., Reveron, H., Tadier, S., Grémillard, L., Barthès, A., Datry, T., Bouchez, A., Lefébure, T., 2022 - Passive sampling of environmental DNA in aquatic environments using 3D‐printed hydroxyapatite samplers. Molecular Ecology Resources. 22:2158-2170. ⟨10.1111/1755-0998.13604⟩
    Amiot, R., Kusuhashi, N., Saegusa, H., Shibata, M., Ikegami, N., Shimojima, S., Sonoda, T., Fourel, F., Ikeda, T., Lécuyer, C., Philippe, M., Wang, X., 2021 - Paleoclimate and ecology of Cretaceous continental ecosystems of Japan inferred from the stable oxygen and carbon isotope compositions of vertebrate bioapatite. Journal of Asian Earth Sciences, 205, 104602. (10.1016/j.jseaes.2020.104602)
    Bahar, T., Oxarango, L., Castebrunet, H., Rossier Y., Mermillod-Blondin, F., 2021 - 3D modelling of solute transport and mixing during managed aquifer recharge with an infiltration basin. Journal of Contaminant Hydrology 237: 103758. (10.1016/j.jconhyd.2020.103758)
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    Fiasca, B., Stoch, F., Olivier, M.J., Maazouzi, C., Petitta, M., Di Cioccio, A., Galassi, D.M.P., 2014 - The dark side of springs: what drives small-scale spatial patterns of subsurface meiofaunal assemblages ? Journal of Limnology, 73(1) : 55-64.
    Foucreau, N., Cottin, D., Piscart, C., Hervant, F., 2014 - Physiological and metabolic responses to rising temperature in Gammarus pulex (Crustacea) populations living under continental or Mediterranean climates. Comparative Biochemistry and Physiology, Part A 168 : 69–75.
    Foulquier, A., Dehedin, A., Piscart, C., Montuelle, B., Marmonier, P., 2014 - Habitat heterogeneity influences the response of microbial communities to severe low-flow periods in alluvial wetlands. Freshwater Biology, 59(3) : 463-476.
    Gette-Bouvarot, M., Mermillod-Blondin, F., Angulo-Jaramillo, R., Delolme, C., Lemoine, D., Lassabatere, L., Loizeau, S., Volatier, L., 2014 - Coupling hydraulic and biological measurements highlights the key influence of algal biofilm on infiltration basin performance. Ecohydrology, 7(3) : 950-964.
    Graillot, D., Paran, F., Bornette, G., Marmonier, P., Piscart, C., Cadilhac, L., 2014 - Coupling groundwater modeling and biological indicators for identifying river/aquifer exchanges. SpringerPlus, 3(68) : 1-14.
    Griebler, C., Malard, F., Lefébure, T., 2014 - Current developments in groundwater ecology — from biodiversity to ecosystem function and services. Current Opinion in Biotechnology, 27 : 159–167.
    Hidalgo, K., Mouline,K., Mamai, W., Foucreau, N., Dabire, K.R., Bouchereau, A., Simard, F., Renault, D., 2014 - Novel insights into the metabolic and biochemical underpinnings assisting dry-season survival in female malaria mosquitoes of the Anopheles gambiae complex. Journal of Insect Physiology, 70 : 102–116.
    Mondy, N., Grossi, V., Cathalan, E., Delbecque, J.P., Mermillod-Blondin, F., Douady, C.J., 2014 - Sterols and steroids in a freshwater crustacean (Proasellus meridianus) : hormonal response to nutritional input. Invertebrate Biology, 133(1) : 99-107.
    Plancq, J., Mattioli, E., Pittet, B., Simon, L., Grossi, V., 2014 - Productivity and sea-surface temperature changes recorded during the late Eocene–early Oligocene at DSDP Site 511 (South Atlantic). Palaeogeography, Palaeoclimatology, Palaeoecology, 407 : 34-44.
    Zagmajster, M., Eme, D., Fiser, C., Galassi, D., Marmonier, P., Stoch, F., Cornu, J.F., Malard, F., 2014 - Geographic variation in range size and beta diversity of groundwater crustaceans: insights from habitats with low thermal seasonality. Global Ecology and Biogeography, 23 : 1135–1145.
    Andre, A., Weiner, A., Quillévéré, F., Aurahs, R., Morard, R., Douady, C.J., De Garidel-Thoron, T., Escarguel, G., De Vargas, C., Kucera, M., 2013 - The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer. Paleobiology, 39(1) : 21–39.
    Bell, J.A., Jerome, J.P., Plovanich-Jones, A.E., Smith, E.J., Gettings, J.R., Kim, H.Y., Landgraf, J.R., Lefébure, T., Kopper, J.J., Rathinam, V.A., St. Charles, J.L., Buffa, B.A., Brooks, A.P., Poe, S.A., Eaton, K.A., Stanhope, M.J., Mansfield, L.S., 2013 - Outcome of infection of C57BL/6 IL-10 mice with Campylobacter jejuni strains is correlated with genome content of open reading frames up- and down-regulated in vivo. Microbial Pathogenesis 54 : 1-19.
    Canedo-Argüelles, M., Kefford, B.J., Piscart, C., Prat , N., Schäfer, R.B., Schulz, C.J., 2013 - Salinisation of rivers: An urgent ecological issue. Environmental Pollution 173 : 157-167.
    Capderrey, C., Datry, T., Foulquier, A., Claret, C., Malard, F., 2013 - Invertebrate distribution across nested geomorphic features in braided-river landscapes. Freshwater Science, 32(4) : 1188-1204.
    Capderrey, C., Kaufmann, B., Jean, P., Malard, F., Konecny-Dupré, L., Lefébure T., Douady, C.J., 2013 - Microsatellite Development and First Population Size Estimates for the Groundwater Isopod Proasellus walteri. PLoS One, 8(9) e76213 : 1-10.
    Cornejo, O.E., Lefébure, T., Pavinski Bitar, P.D., Lang, P., Richards, V.P., Eilertson, K., Do, T., Beighton, D., Zeng, L., Ahn, S.J., Burne, R.A., Siepel, A., Bustamante, C.D., Stanhope, M.J., 2013 - Evolutionary and Population Genomics of the Cavity Causing Bacteria Streptococcus mutans. Molecular Biology and Evolution, 30(4) : 881–893.
    Cornu, J.F., Eme, D., Malard, F., 2013 - The distribution of groundwater habitats in Europe. Hydrogeology Journal, 21: 949–960.
    Dehedin, A., Dole-Olivier, M.J., Piscart, C., Mimoun, D., Bornette, G., Marmonier, P., 2013 - Long-term changes and drying modality affect interstitial assemblages of alluvial Wetlands. Wetlands, 33 : 537–550.
    Dehedin, A., Maazouzi, C., Puijalon, S., Marmonier, P., Piscart, C., 2013 – The combined effects of water level reduction and an increase in ammonia concentration on organic matter processing by key freshwater shredders in alluvial wetlands. Global Change Biology, 19 : 763–774.
    Dehedin, A.,, Piscart, C., Marmonier, P., 2013 - Seasonal variations of the effect of temperature on lethal and sublethal toxicities of ammonia for three common freshwater shredders, Chemosphere 90 : 1016–1022.
    Descloux, S., Datry, T., Marmonier, P., 2013 - Benthic and hyporheic invertebrate assemblages along a gradient of increasing streambed colmation by fine sediment. Aquatic Science, 33, 537-550.
    Eme, D., Malard, F., Konecny-Dupré, L., Lefébure, T., Douady, C.J., 2013 - Bayesian phylogeographic inferences reveal contrasting colonization dynamics among European groundwater isopods. Molecular Ecology. 22 : 5685-5699.
    Foucreau, N., Piscart, C., Puijalon, S., Hervant, F., 2013 - Effect of Climate-Related Change in Vegetation on Leaf Litter Consumption and Energy Storage by Gammarus pulex from Continental or Mediterranean Populations. PLoS One, 8(10) e77242 : 1-9.
    Foucreau, N., Puijalon, S., Hervant, F., Piscart, C., 2013 - Effect of leaf litter characteristics on leaf conditioning and on consumption by Gammarus pulex. Freshwater Biology, 58 : 1672–1681.
    Lawniczak, M., Romestaing, C., Roussel, D., Maazouzi, C., Renault, D., Hervant, F., 2013 - Preventive antioxidant responses to extreme oxygen level fluctuation in a subterranean crustacean. Comparative Biochemistry and Physiology, Part A 165 : 299–303.
    Lin, C., Den Bakker, H.C., Suzuki, H., Lefébure, T., Ponnala, L., Sun, Q., Stanhope, M.J., Wiedmann, M., Duhamel, G.E., 2013 - Complete Genome Sequence of the Porcine Strain Brachyspira pilosicoli P43/6/78T. Genome Announcements, 1(1), e00215-12 : 1-2.
    Maazouzi, C., Claret, C., Dole-Olivier, M.J., Marmonier, P., 2013 - Nutrient dynamics in river bed sediments: effects of hydrological disturbances using experimental flow manipulations. Journal of Soils and Sediments, 13 : 207–219.
    Marmonier, P., Maazouzi, C., Foulquier, A., Navel, S., François, C., Hervant, F., Mermillod-Blondin, F., Vienney, A., Barraud S., Togola, A., Piscart, C., 2013 - The use of crustaceans as sentinel organisms to evaluate groundwater ecological quality. Ecological Engineering, 57 : 118–132.
    Mermillod-Blondin, F., Foulquier, A., Gilbert, F., Navel, S., Montuelle, B., Bellvert, F., Comte, G., Grossi , V., Fourel, F., Lecuyer, F., Simon, L., 2013 - Benzo(a)pyrene inhibits the role of the bioturbator Tubifex tubifex in river sediment biogeochemistry. Science of the Total Environment 450-451 : 230–241.
    Mermillod-Blondin, F., Foulquier, A., Maazouzi, C., Navel, S., Negrutiu, Y., Vienney, A., Simon, L., Marmonier, P., 2013 - Ecological assessment of groundwater trophic status by using artificial substrates to monitor biofilm growth and activity. Ecological Indicators, 25 : 230–238.
    Mermillod-Blondin, F., Lefour, C., Lalouette, L., Renault, D., Malard, F., Simon, L., Douady, C.J., 2013 - Thermal tolerance breadths among groundwater crustaceans living in a thermally constant environment. The Journal of Experimental Biology, 216 : 1683-1694.
    Morvan, C., Malard, F., Paradis, E., Lefébure, T., Konecny-Dupré, L ., Douady, C.J., 2013 - Timetree of Aselloidea Reveals Species Diversification Dynamics in Groundwater. Systematic Biology, 62(4): 512–522.
    Navel, S., Piscart, C., Mermillod-Blondin, F., Marmonier, P., 2013 - New methods for the investigation of leaf litter breakdown in river sediments. Hydrobiologia, 700 : 301–312.
    Nogaro, G., Datry, T., Mermillod-Blondin, F., Foulquier, A., Montuelle, B., 2013 - Influence of hyporheic zone characteristics on the structure and activity of microbial assemblages. Freshwater Biology, 58 : 2567–2583.
    Palmer, S.R., Miller, J.H., Abranches, J., Zeng, L., Lefébure, T., Richards, V.P., Lemos, J.A., Stanhope, M.J., Burne, R.A., 2013 - Phenotypic Heterogeneity of Genomically-Diverse Isolates of Streptococcus mutans. PLoS One, 8(4), e61358 : 1-17.
    Piscart, C., Merzoug, D., Hafid, H., 2013 - A new species of Echinogammarus from algerian freshwaters, Echinogammarus haraktis n. Sp. (Peracarida, Amphipoda). Crustaceana 86(13-14) : 1623-1633.
    Quillévéré, F., Morard, R., Escarguel, G., Douady, C.J., Ujiie, Y., De Garidel-Thoron, T., De Vargas, C., 2013 - Global scale same-specimen morpho-genetic analysis of Truncorotalia truncatulinoides : A perspective on the morphological species concept in planktonic foraminifera. Palaeogeography Palaeoclimatology Palaeoecology 391 : 2-12.
    Richards, V.P., Lefébure, T., Pavinski Bitar, P.D., Stanhope, M.J., 2013 - Comparative characterization of the virulence gene clusters (lipooligosaccharide [LOS] and capsular polysaccharide [CPS]) for Campylobacter coli, Campylobacter jejuni subsp. jejuni and related Campylobacter species. Infection, Genetics and Evolution, 14 : 200–213.
    Richards, V.P., Zadoks, Pavinski Bitar, P.D, Lefébure, T., Lang, P., Werner, B., Tikofsky, Moroni, P., Stanhope, M.J., 2013 - Genome characterization and population genetic structure of the zoonotic pathogen, Streptococcus canis. BMC Microbiology 2012, 12(293) : 1-16.
    Achurra A., Creuze Des Chatelliers, M., Rodriguez, P., 2012 - Troglodrilus jugeti n. sp. (Annelida, Clitellata, Tubificinae), a new stygobiont oligochaete species from south-western Europe. Zootaxa, 3229 : 35–46.
    Burne, R.A., Zeng, L., Ahn, S.J., Palmer, S.R., Liu, Y., Lefebure, T., Stanhope, M.J., Nascimento, M.M., 2012 – Progress Dissecting the oral microbiome in caries and health. Advances in Dental Research, 24(2) : 77-80.
    Cottin, D., Brown A., Oliphant, A., Mestre, N.C., Ravaux, J., Shillito , B., Thatje, S., 2012 – Sustained hydrostatic pressure tolerance of the shallow water shrimp Palaemonetes varians at different temperatures: Insights into the colonisation of the deep sea. Comparative Biochemistry and Physiology, Part A, 162 : 357–363.
    Cottin, D., Roussel, D., Foucreau, N., Hervant, F., Piscart, C., 2012 - Disentangling the effects of local and regional factors on the thermal tolerance of freshwater crustaceans. Naturwissenschaften, 99(4) : 259-264.
    Foucreau N., Renault D., Hidalgo K., Lugan R., Pétillon J., 2012. Effects of diet and salinity on the survival, egg laying and metabolic fingerprints of the ground-dwelling spider Arctosa fulvolineata(Araneae, Lycosidae). Comparative Biochemistry and Physiology Part A, 163: 388-395.
    Kefford, B.J., Hickey, G.L., Gasith, A., Ben-David, E., Dunlop, J.E., Palmer, C.G., Allan, K., Choy, S.C., Piscart, C., 2012 - Global Scale Variation in the Salinity Sensitivity of Riverine Macroinvertebrates: Eastern Australia, France, Israel and South Africa. PLoS One, 7(5) : 1-12.
    Lefébure, T., Richards, V.P., Lang, P., Pavinski-Bitar, P., Stanhope, M.J., 2012 - Gene repertoire evolution of Streptococcus pyogenes inferred from phylogenomic analysis with Streptococcus canis and Streptococcus dysgalactiae. PLoS One, 7(5) : 1-11.
    Lemoine, D.G., Mermillod-Blondin, F., Barrat-Segretain, M.H., Massé, C., Malet, E., 2012 - The ability of aquatic macrophytes to increase root porosity and radial oxygen loss determines their resistance to sediment anoxia. Aquatic Ecology, 46(2) : 191-200.
    Maazouzi, C., Morhain, E., Masson, G., Pihan, J.C., 2012 - Fatty Acids as Indicators of Environmental Condition in Microalgae. Environmental Indicators, 7 : 3-10.
    Marmonier, P., Archambaud, G., Belaidi, N., Bougon, N., Breil, P., Chauvet, E., Claret, C., Cornut, J., Datry, T., Dole-Olivier, M.J., Dumont, B., Flipo, N., Foulquier, A., Gerino, M., Guilpart, A., Julien, F., Maazouzi, C., Martin, D., Mermillod-Blondin, F., Montuelle, B., Namour, P., Navel, S., Ombredane, D., Pelte, T., Piscart, C., Pusch, M., Stroffek, S., Robertson, A., Sanchez-Pérez, J.M., Sauvage, S., Taleb, A., Wantzen, M., Vervier, P., 2012 - The role of organisms in hyporheic processes: gaps in current knowledge, needs for future research and applications. Annales de Limnologie, International Journal of Limnology, 48 : 253-266.
    Martinez-Ansemil, E., , Creuzé des Châtelliers, M., Martin, P., Sambugar, B., 2012 - The Parvidrilidae – a diversified groundwater family : description of six new species from southern Europe, and clues for its phylogenetic position within Clitellata (Annelida). Zoological Journal of the Linnean Society, 166 : 530–558. With 10 figures.
    Navel, S., Mermillod-Blondin, F., Montuelle, B., Chauvet, E., Marmonier, P., 2012 - Sedimentary context controls the influence of ecosystem engineering by bioturbators on microbial processes in river sediments. Oikos, 121 : 1134–1144.
    Navel, S., Sauvage, S., Delmotte, S., Gerino, M., Marmonier P., Mermillod-Blondin, F., 2012 - A modelling approach to quantify the influence of fine sediment deposition on biogeochemical processes occurring in the hyporheic zone. Annales de Limnologie, International Journal of Limnology, 48 : 279-287.
    Plancq, J., Grossi, V., Henderiks, J. Simon, L., Mattioli, E., 2012 - Alkenone producers during late Oligocene–early Miocene revisited. Paleoceanography, 27 : 1-12.
    Renault, D., Bijou, A., Hervant, F. - Impact of different acclimation temperatures and duration on the chill coma temperature and oxygen consumption in the tenebrionid beetle Alphitobius diaperinus. Physiological Entomology, 37 : 354–359.
    Suzuki, S., Lefébure, T., Pavinski Bitar, P., Stanhope, M.J., 2012 - Comparative genomic analysis of the genus Staphylococcus including Staphylococcus aureus and its newly described sister species Staphylococcus simiae. BMC Genomics, 13(38) : 1-8.
    Tuekam Kayo, R., Marmonier, P., Zebaze Togouet, S.H., Nola, M., Piscart, C., 2012 – An annotated checklist of freshwater stygobiotic crustaceans of Africa and Madagascar. Crustaceana 85 (12-13) 1613-1631.
    2016 - Licci, S., Delolme, C., Marmonier, P., Philippe, M., Cornacchia, L., Gardette, V., Bouma, T., Puijalon, S. Effect of aquatic plant patches on flow and sediment: the case of Callitriche platycarpa and Elodea nuttallii. P.M. Rowinski and A. Marion (eds.), Hydrodynamic and Mass Transport at Freshwater Aquatic Interfaces, GeoPlanet: Earth and Planetary Sciences.
    2022 - Hervant, F. Behavioral, physiological and metabolic responses to long-term food deprivation (18 months) and subsequent renutrition in a cave amphibian, Proteus anguinus. Acta Physiologica 236 (726): e13893.
    2022 - Olivier J.M., Carrel G., Lamouroux N., Dole-Olivier M.J., Malard F., Bravard J.P., Piégay H., Castella E., Barthélémy C., 2022 - The Rhône River Basin. Pp. 391-451 In Rivers of Europe (second edition), Tockner K., Zarfl C. & Robinson C.T. (Eds).
Site de la Doua
Université Claude Bernard - Lyon I
CNRS, UMR 5023 - LEHNA (Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés)
3-6, rue Raphaël Dubois - Bâtiments Darwin C & Forel, 69622 Villeurbanne Cedex
43, Boulevard du 11 novembre 1918
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Tél. : (33) 4 72 43 29 53 - Fax : (33) 4 72 43 11 41
Site de Vaulx-en-Velin
ENTPE
CNRS, UMR 5023 - LEHNA (Laboratoire d'Ecologie des Hydrosystèmes Naturels et Anthropisés)
3, rue Maurice Audin
69518 Vaulx-en-Velin
Plan d'accès
Tél : (33) 04 72 04 70 56 - Fax : (33) 04 72 04 77 43